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  5. PSME_00055307-RA

PSME_00055307-RA


Description : (at1g62910 : 279.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63150.1); Has 124657 Blast hits to 15540 proteins in 305 species: Archae - 10; Bacteria - 122; Metazoa - 2303; Fungi - 2464; Plants - 114740; Viruses - 0; Other Eukaryotes - 5018 (source: NCBI BLink). & (q76c99|rf1_orysa : 249.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 514.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055307-RA
Cluster HCCA clusters: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.03 Orthogroups_2024-Update
PSME_00012031-RA No alias (at3g22470 : 323.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 144 193
IPR002885 Pentatricopeptide_repeat 370 411
IPR002885 Pentatricopeptide_repeat 214 263
IPR002885 Pentatricopeptide_repeat 284 333
IPR002885 Pentatricopeptide_repeat 433 481
IPR002885 Pentatricopeptide_repeat 106 138
No external refs found!