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PSME_00055368-RA


Description : (original description: no original description)


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055368-RA
Cluster HCCA clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
440806 No alias winged-helix DNA-binding transcription factor family protein 0.04 Orthogroups_2024-Update
LOC_Os07g08710 No alias AT hook-containing DNA-binding protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_5243726g0010 No alias (p27806|h1_wheat : 91.3) Histone H1 - Triticum aestivum... 0.04 Orthogroups_2024-Update
PSME_00018261-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Solyc02g084240 No alias H1 histone-like protein 0.02 Orthogroups_2024-Update
Solyc06g084020 No alias histone H1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 57 125
No external refs found!