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  5. PSME_00055403-RA

PSME_00055403-RA


Description : (at3g22470 : 280.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 243.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 532.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055403-RA
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
MA_10425801g0010 No alias (at3g22470 : 379.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_10425907g0020 No alias (at1g12775 : 92.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_124221g0010 No alias (at3g22470 : 333.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_4589g0010 No alias (at3g22470 : 368.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_65832g0010 No alias (at5g39710 : 294.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 345 376
IPR002885 Pentatricopeptide_repeat 383 432
IPR002885 Pentatricopeptide_repeat 138 187
IPR002885 Pentatricopeptide_repeat 208 257
IPR002885 Pentatricopeptide_repeat 278 327
IPR002885 Pentatricopeptide_repeat 72 99
IPR002885 Pentatricopeptide_repeat 107 135
No external refs found!