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- Pseudotsuga menziesii
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- PSME_00055406-RA
PSME_00055406-RA
Description : (q41542|xth_wheat : 94.4) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) - Triticum aestivum (Wheat) & (at4g25820 : 92.4) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.; xyloglucan endotransglucosylase/hydrolase 14 (XTH14); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: radicle, root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 13 (TAIR:AT5G57540.1); Has 2269 Blast hits to 2247 proteins in 321 species: Archae - 0; Bacteria - 309; Metazoa - 0; Fungi - 454; Plants - 1389; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Pseudotsuga release: PSME_00055406-RA | |
| Cluster | HCCA clusters: Cluster_33 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| Pp1s252_40V6 | No alias | squamosa promoter-binding | 0.02 | Orthogroups_2024-Update | |
| Sopen10g004860 | No alias | SBP domain | 0.03 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEA | InterProScan predictions |
| BP | GO:0005975 | carbohydrate metabolic process | IEA | InterProScan predictions |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| MF | GO:0016787 | hydrolase activity | None | Extended |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0005985 | sucrose metabolic process | IEP | Predicted GO |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Predicted GO |
| MF | GO:0016157 | sucrose synthase activity | IEP | Predicted GO |
| MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR000757 | GH16 | 136 | 185 |
