PSME_00055564-RA

Description : (at1g24090 : 97.8) RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description)

Gene families : OG_42_0002280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002280_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00055564-RA
Cluster	HCCA clusters: Cluster_139

Target	Alias	Description	ECC score	Gene Family Method	Actions
PSME_00004246-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
PSME_00008797-RA	No alias	no hits & (original description: no original description)	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	InterProScan predictions
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005543	phospholipid binding	IEP	Predicted GO
MF	GO:0008289	lipid binding	IEP	Predicted GO
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	280	400
IPR026960	RVT-Znf	47	134

External Links

No external refs found!

PSME_00055564-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation