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  5. PSME_00055632-RA

PSME_00055632-RA


Description : (at1g71870 : 559.0) MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink). & (reliability: 1118.0) & (original description: no original description)


Gene families : OG_42_0000378 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055632-RA
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
A4A49_10197 No alias protein detoxification 54 0.02 Orthogroups_2024-Update
Brara.A01316.1 No alias metabolite transporter *(DTX) 0.06 Orthogroups_2024-Update
Glyma.01G132200 No alias MATE efflux family protein 0.02 Orthogroups_2024-Update
Glyma.03G036200 No alias MATE efflux family protein 0.03 Orthogroups_2024-Update
PSME_00054354-RA No alias (at1g58340 : 539.0) ZF14; FUNCTIONS IN: antiporter... 0.03 Orthogroups_2024-Update
Seita.4G183800.1 No alias metabolite transporter *(DTX) 0.06 Orthogroups_2024-Update
Seita.9G018900.1 No alias metabolite transporter *(DTX) 0.04 Orthogroups_2024-Update
Sobic.006G184400.1 No alias metabolite transporter *(DTX) 0.03 Orthogroups_2024-Update
Sobic.010G167800.1 No alias metabolite transporter *(DTX) 0.06 Orthogroups_2024-Update
Sopen11g008910 No alias MatE 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006855 drug transmembrane transport IEA InterProScan predictions
MF GO:0015238 drug transmembrane transporter activity IEA InterProScan predictions
MF GO:0015297 antiporter activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002528 MATE_fam 258 419
IPR002528 MATE_fam 37 197
No external refs found!