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  5. PSME_00055670-RA

PSME_00055670-RA


Description : (at2g38970 : 266.0) Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G54780.1); Has 4418 Blast hits to 4397 proteins in 764 species: Archae - 94; Bacteria - 1613; Metazoa - 1251; Fungi - 170; Plants - 535; Viruses - 5; Other Eukaryotes - 750 (source: NCBI BLink). & (reliability: 532.0) & (original description: no original description)


Gene families : OG_42_0000384 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000384_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055670-RA
Cluster HCCA clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Cre09.g395843 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
Glyma.04G089851 No alias Zinc finger (C3HC4-type RING finger) family protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G084330.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os08g03260 No alias zinc finger family protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_11225g0010 No alias (at5g60710 : 623.0) Zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
MA_218345g0010 No alias (at2g38970 : 115.0) Zinc finger (C3HC4-type RING finger)... 0.04 Orthogroups_2024-Update
PSME_00015308-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00046691-RA No alias (at3g54780 : 185.0) Zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
PSME_00054741-RA No alias (at5g60710 : 502.0) Zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
Sobic.001G226800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G226900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G508466.1 No alias Unknown function 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 118 147
IPR002035 VWF_A 358 469
No external refs found!