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  5. PSME_00055763-RA

PSME_00055763-RA


Description : (at2g13600 : 521.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 157.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1042.0) & (original description: no original description)


Gene families : OG_42_0010321 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010321_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055763-RA
Cluster HCCA clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
125582 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
MA_129805g0010 No alias (at4g13650 : 505.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_820066g0010 No alias (at2g13600 : 516.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00009743-RA No alias (at4g02750 : 410.0) Tetratricopeptide repeat (TPR)-like... 0.09 Orthogroups_2024-Update
PSME_00014131-RA No alias (at4g02750 : 337.0) Tetratricopeptide repeat (TPR)-like... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 109 134
IPR002885 Pentatricopeptide_repeat 46 65
IPR002885 Pentatricopeptide_repeat 498 521
IPR002885 Pentatricopeptide_repeat 601 622
IPR002885 Pentatricopeptide_repeat 267 313
IPR002885 Pentatricopeptide_repeat 135 182
IPR002885 Pentatricopeptide_repeat 524 571
IPR002885 Pentatricopeptide_repeat 399 446
IPR002885 Pentatricopeptide_repeat 201 233
IPR002885 Pentatricopeptide_repeat 367 396
No external refs found!