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  5. Sopen06g018280

Sopen06g018280


Description : Ribosomal L40e family


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g018280
Cluster HCCA clusters: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
At4g02970 No alias Function unknown 0.02 Orthogroups_2024-Update
Bradi1g32700 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Bradi1g32860 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Bradi3g03957 No alias polyubiquitin 3 0.02 Orthogroups_2024-Update
Brara.F02025.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G072680.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU7Hr1G103160.4 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
LOC_Os02g06640 No alias ubiquitin family protein, putative, expressed 0.03 Orthogroups_2024-Update
Sobic.004G273300.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 18 49
IPR001975 Ribosomal_L40e 54 103
No external refs found!