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  5. PSME_00055830-RA

PSME_00055830-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0001139 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001139_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055830-RA
Cluster HCCA clusters: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
At1g18290 No alias DUF4228 domain protein [Source:UniProtKB/TrEMBL;Acc:Q9LE02] 0.04 Orthogroups_2024-Update
At5g17350 No alias Uncharacterized protein At5g17350... 0.03 Orthogroups_2024-Update
Bradi2g46810 No alias Function unknown 0.02 Orthogroups_2024-Update
Brara.B00708.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G323387 No alias Function unknown 0.04 Orthogroups_2024-Update
Glyma.07G180600 No alias Function unknown 0.05 Orthogroups_2024-Update
Glyma.20G009000 No alias Function unknown 0.03 Orthogroups_2024-Update
MA_10432844g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_38919g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Sobic.009G224200.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc02g091180 No alias LOW QUALITY:DUF4228 domain protein (AHRD V3.3 *** G7IAV0_MEDTR) 0.03 Orthogroups_2024-Update
Solyc04g007580 No alias LOW QUALITY:DUF4228 domain protein (AHRD V3.3 *** G7IAV0_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025322 DUF4228_plant 1 71
No external refs found!