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PSME_00055887-RA


Description : (at5g22880 : 165.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.; histone B2 (HTB2); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o22582|h2b_goshi : 163.0) Histone H2B - Gossypium hirsutum (Upland cotton) & (reliability: 330.0) & (original description: no original description)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055887-RA
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
A4A49_64528 No alias putative histone h2b.1 0.02 Orthogroups_2024-Update
Seita.3G216500.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
evm.model.tig00000944.18 No alias (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0019843 rRNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 68 181
No external refs found!