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  5. Sopen06g018360

Sopen06g018360


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0000604 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000604_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g018360
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
At1g32790 No alias CTC-interacting domain 11 [Source:UniProtKB/TrEMBL;Acc:F4IEC7] 0.02 Orthogroups_2024-Update
Bradi1g39150 No alias CTC-interacting domain 11 0.02 Orthogroups_2024-Update
Bradi3g09250 No alias CTC-interacting domain 11 0.03 Orthogroups_2024-Update
Brara.C03528.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.F02065.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I00572.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I00573.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G080440.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00005274-RA No alias (at4g10610 : 306.0) RNA-binding protein, putative.... 0.02 Orthogroups_2024-Update
Solyc06g053300 No alias RNA-binding protein, putative (AHRD V3.3 *** B9T1D4_RICCO) 0.04 Orthogroups_2024-Update
Solyc07g056590 No alias RNA-binding protein, putative (AHRD V3.3 *** B9SVC9_RICCO) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 194 260
IPR000504 RRM_dom 291 358
IPR009818 Ataxin-2_C 113 126
No external refs found!