1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00055958-RA

PSME_00055958-RA


Description : (at3g17630 : 261.0) member of Putative Na+/H+ antiporter family; cation/H+ exchanger 19 (CHX19); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 18 (TAIR:AT5G41610.1); Has 10353 Blast hits to 10313 proteins in 2156 species: Archae - 388; Bacteria - 8084; Metazoa - 59; Fungi - 214; Plants - 674; Viruses - 0; Other Eukaryotes - 934 (source: NCBI BLink). & (reliability: 522.0) & (original description: no original description)


Gene families : OG_42_0000316 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000316_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055958-RA
Cluster HCCA clusters: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
A4A49_00804 No alias cationh(+) antiporter 18 0.02 Orthogroups_2024-Update
At4g23700 No alias Cation/H(+) antiporter 17... 0.03 Orthogroups_2024-Update
Glyma.05G192400 No alias cation/hydrogen exchanger 15 0.03 Orthogroups_2024-Update
Glyma.19G230900 No alias cation/hydrogen exchanger 15 0.02 Orthogroups_2024-Update
PSME_00009262-RA No alias (at3g17630 : 267.0) member of Putative Na+/H+ antiporter... 0.01 Orthogroups_2024-Update
PSME_00013397-RA No alias (at3g17630 : 322.0) member of Putative Na+/H+ antiporter... 0.03 Orthogroups_2024-Update
PSME_00017602-RA No alias (at3g17630 : 197.0) member of Putative Na+/H+ antiporter... 0.01 Orthogroups_2024-Update
PSME_00033720-RA No alias (at3g17630 : 366.0) member of Putative Na+/H+ antiporter... 0.04 Orthogroups_2024-Update
Potri.003G134900 No alias cation/H+ exchanger 18 0.02 Orthogroups_2024-Update
Seita.3G391600.1 No alias proton 0.02 Orthogroups_2024-Update
Seita.5G359700.1 No alias proton 0.02 Orthogroups_2024-Update
Sobic.001G027900.1 No alias proton 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006812 cation transport IEA InterProScan predictions
MF GO:0015299 solute:proton antiporter activity IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006153 Cation/H_exchanger 2 218
No external refs found!