PSME_00056044-RA

Description : (at5g65700 : 783.0) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.; BARELY ANY MERISTEM 1 (BAM1); CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT3G49670.1). & (p93194|rpk1_iponi : 395.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1566.0) & (original description: no original description)

Gene families : OG_42_0000799 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000799_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00056044-RA
Cluster	HCCA clusters: Cluster_203

Target	Alias	Description	ECC score	Gene Family Method
A4A49_22133	No alias	leucine-rich repeat receptor-like...	0.03	Orthogroups_2024-Update
Glyma.12G040000	No alias	Leucine-rich receptor-like protein kinase family protein	0.03	Orthogroups_2024-Update
MA_64117g0010	No alias	(at5g65700 : 1315.0) Encodes a CLAVATA1-related receptor...	0.04	Orthogroups_2024-Update
PSME_00010165-RA	No alias	(at5g65700 : 1124.0) Encodes a CLAVATA1-related receptor...	0.03	Orthogroups_2024-Update
PSME_00030501-RA	No alias	(at5g65700 : 849.0) Encodes a CLAVATA1-related receptor...	0.03	Orthogroups_2024-Update
PSME_00030502-RA	No alias	(at3g49670 : 568.0) Encodes a CLAVATA1-related receptor...	0.06	Orthogroups_2024-Update
PSME_00038397-RA	No alias	(at3g49670 : 866.0) Encodes a CLAVATA1-related receptor...	0.04	Orthogroups_2024-Update
PSME_00040379-RA	No alias	(at5g65700 : 1284.0) Encodes a CLAVATA1-related receptor...	0.05	Orthogroups_2024-Update
PSME_00042193-RA	No alias	(at5g65700 : 543.0) Encodes a CLAVATA1-related receptor...	0.05	Orthogroups_2024-Update
PSME_00047437-RA	No alias	(at5g65700 : 584.0) Encodes a CLAVATA1-related receptor...	0.03	Orthogroups_2024-Update
Pp1s14_447V6	No alias	receptor protein kinase clavata1	0.02	Orthogroups_2024-Update
Seita.3G118800.1	No alias	LRR-XI protein kinase & EC_2.7 transferase transferring...	0.04	Orthogroups_2024-Update
Solyc03g043770	No alias	Non-specific serine/threonine protein kinase (AHRD V3.3...	0.02	Orthogroups_2024-Update
Sopen02g036420	No alias	Leucine Rich repeats (2 copies)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	InterProScan predictions
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004000	adenosine deaminase activity	IEP	Predicted GO
MF	GO:0008171	O-methyltransferase activity	IEP	Predicted GO
BP	GO:0009719	response to endogenous stimulus	IEP	Predicted GO
BP	GO:0009725	response to hormone	IEP	Predicted GO
BP	GO:0010033	response to organic substance	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predicted GO
MF	GO:0019239	deaminase activity	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	144	201
IPR001611	Leu-rich_rpt	434	494
IPR013210	LRR_N_plant-typ	30	68
IPR000719	Prot_kinase_dom	618	889

External Links

No external refs found!

PSME_00056044-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation