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  5. PSME_00056289-RA

PSME_00056289-RA


Description : (at5g08310 : 581.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 73334 Blast hits to 15617 proteins in 287 species: Archae - 3; Bacteria - 36; Metazoa - 297; Fungi - 561; Plants - 70696; Viruses - 0; Other Eukaryotes - 1741 (source: NCBI BLink). & (q76c99|rf1_orysa : 254.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1162.0) & (original description: no original description)


Gene families : OG_42_0009566 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009566_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056289-RA

Target Alias Description ECC score Gene Family Method Actions
At5g08310 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 461 491
IPR002885 Pentatricopeptide_repeat 600 632
IPR002885 Pentatricopeptide_repeat 638 687
IPR002885 Pentatricopeptide_repeat 191 236
IPR002885 Pentatricopeptide_repeat 332 379
IPR002885 Pentatricopeptide_repeat 708 757
IPR002885 Pentatricopeptide_repeat 498 547
IPR002885 Pentatricopeptide_repeat 768 810
IPR002885 Pentatricopeptide_repeat 299 327
IPR002885 Pentatricopeptide_repeat 404 431
IPR002885 Pentatricopeptide_repeat 268 292
IPR002885 Pentatricopeptide_repeat 124 154
No external refs found!