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  5. PSME_00056315-RA

PSME_00056315-RA


Description : (at3g12770 : 566.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 126.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1132.0) & (original description: no original description)


Gene families : OG_42_0010321 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010321_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056315-RA
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
125582 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
MA_129805g0010 No alias (at4g13650 : 505.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_820066g0010 No alias (at2g13600 : 516.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00014131-RA No alias (at4g02750 : 337.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 305 352
IPR002885 Pentatricopeptide_repeat 405 453
IPR002885 Pentatricopeptide_repeat 204 250
IPR002885 Pentatricopeptide_repeat 103 150
IPR032867 DYW_dom 579 669
IPR002885 Pentatricopeptide_repeat 480 504
No external refs found!