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  5. PSME_00056351-RA

PSME_00056351-RA


Description : (at2g03880 : 544.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G24000.1); Has 41924 Blast hits to 14587 proteins in 276 species: Archae - 3; Bacteria - 26; Metazoa - 84; Fungi - 128; Plants - 40967; Viruses - 0; Other Eukaryotes - 716 (source: NCBI BLink). & (q76c99|rf1_orysa : 86.7) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1022.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056351-RA
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
130420 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
82024 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g57140 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G035600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G191000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G071800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s26_188V6 No alias No description available 0.04 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G398900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g080350 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g092150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 72 120
IPR002885 Pentatricopeptide_repeat 274 321
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 349 372
IPR002885 Pentatricopeptide_repeat 248 269
IPR002885 Pentatricopeptide_repeat 147 172
IPR032867 DYW_dom 448 572
No external refs found!