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  5. PSME_00056374-RA

PSME_00056374-RA


Description : (at4g37170 : 594.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 43848 Blast hits to 14238 proteins in 253 species: Archae - 0; Bacteria - 12; Metazoa - 20; Fungi - 118; Plants - 43065; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink). & (q76c99|rf1_orysa : 120.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1188.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056374-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
At3g08820 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Brara.E03491.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G00509.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G111860.1 No alias Unknown function 0.06 Orthogroups_2024-Update
MA_10426261g0020 No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_7907g0020 No alias (at3g57430 : 717.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.03 Orthogroups_2024-Update
Pp1s15_448V6 No alias MZB10.7; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Seita.8G097200.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.04 Orthogroups_2024-Update
Sopen02g019790 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 269 316
IPR002885 Pentatricopeptide_repeat 370 417
IPR002885 Pentatricopeptide_repeat 168 215
IPR002885 Pentatricopeptide_repeat 445 468
IPR002885 Pentatricopeptide_repeat 111 136
IPR002885 Pentatricopeptide_repeat 140 167
IPR002885 Pentatricopeptide_repeat 513 539
IPR002885 Pentatricopeptide_repeat 44 65
IPR002885 Pentatricopeptide_repeat 344 367
IPR032867 DYW_dom 543 667
No external refs found!