Description : (at1g11290 : 677.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 134.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1354.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00056375-RA | |
Cluster | HCCA clusters: Cluster_215 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
126194 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
74842 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi1g75980 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g20480 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.04G078800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.002G155100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.3G126600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.3G267700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.5G460300.1 | No alias | RNA editing factor *(OTP72) | 0.02 | Orthogroups_2024-Update | |
Sopen01g015270 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen07g026910 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen09g022760 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen11g004720 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen11g029050 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000145 | exocyst | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006887 | exocytosis | IEP | Predicted GO |
BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Predicted GO |
BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016192 | vesicle-mediated transport | IEP | Predicted GO |
BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0022406 | membrane docking | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0032940 | secretion by cell | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0035091 | phosphatidylinositol binding | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
CC | GO:0044448 | cell cortex part | IEP | Predicted GO |
BP | GO:0046903 | secretion | IEP | Predicted GO |
BP | GO:0048278 | vesicle docking | IEP | Predicted GO |
BP | GO:0051640 | organelle localization | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
CC | GO:0099023 | tethering complex | IEP | Predicted GO |
BP | GO:0140029 | exocytic process | IEP | Predicted GO |
BP | GO:0140056 | organelle localization by membrane tethering | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 611 | 634 |
IPR032867 | DYW_dom | 709 | 833 |
IPR002885 | Pentatricopeptide_repeat | 333 | 381 |
IPR002885 | Pentatricopeptide_repeat | 133 | 179 |
IPR002885 | Pentatricopeptide_repeat | 536 | 583 |
IPR002885 | Pentatricopeptide_repeat | 233 | 279 |
IPR002885 | Pentatricopeptide_repeat | 434 | 482 |
No external refs found! |