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PSME_00056514-RA


Description : (at5g02860 : 724.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink). & (q76c99|rf1_orysa : 248.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1448.0) & (original description: no original description)


Gene families : OG_42_0002729 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056514-RA
Cluster HCCA clusters: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
A4A49_21751 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
At5g02860 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.03 Orthogroups_2024-Update
Glyma.11G001100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_71865g0010 No alias (at5g02860 : 701.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Sobic.010G215500.1 No alias stability factor *(PPR10) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 422 482
IPR002885 Pentatricopeptide_repeat 315 376
IPR002885 Pentatricopeptide_repeat 245 306
IPR002885 Pentatricopeptide_repeat 492 551
IPR002885 Pentatricopeptide_repeat 815 845
IPR002885 Pentatricopeptide_repeat 573 622
IPR002885 Pentatricopeptide_repeat 678 723
IPR002885 Pentatricopeptide_repeat 748 796
No external refs found!