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  5. PSME_00056516-RA

PSME_00056516-RA


Description : (at3g19380 : 420.0) plant U-box 25 (PUB25); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 26 (TAIR:AT1G49780.1); Has 2521 Blast hits to 2449 proteins in 133 species: Archae - 0; Bacteria - 22; Metazoa - 177; Fungi - 24; Plants - 2091; Viruses - 3; Other Eukaryotes - 204 (source: NCBI BLink). & (q64ha9|spl11_orysa : 173.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 840.0) & (original description: no original description)


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056516-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
414754 No alias plant U-box 25 0.03 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.02 Orthogroups_2024-Update
A4A49_22370 No alias u-box domain-containing protein 26 0.04 Orthogroups_2024-Update
A4A49_33780 No alias e3 ubiquitin-protein ligase pub23 0.03 Orthogroups_2024-Update
A4A49_38562 No alias u-box domain-containing protein 27 0.03 Orthogroups_2024-Update
At1g49780 No alias U-box domain-containing protein 26... 0.03 Orthogroups_2024-Update
At1g66160 No alias U-box domain-containing protein 20... 0.05 Orthogroups_2024-Update
Brara.C03388.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D02179.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E02265.1 No alias U-Box-group-III E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G041141 No alias plant U-box 26 0.03 Orthogroups_2024-Update
GRMZM2G055052 No alias CYS, MET, PRO, and GLY protein 1 0.05 Orthogroups_2024-Update
GRMZM2G071484 No alias plant U-box 22 0.03 Orthogroups_2024-Update
GRMZM2G151204 No alias CYS, MET, PRO, and GLY protein 1 0.04 Orthogroups_2024-Update
GRMZM2G168980 No alias plant U-box 23 0.03 Orthogroups_2024-Update
GRMZM5G811633 No alias plant U-box 26 0.04 Orthogroups_2024-Update
GRMZM5G855994 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G242900 No alias CYS, MET, PRO, and GLY protein 1 0.03 Orthogroups_2024-Update
Glyma.04G212300 No alias plant U-box 22 0.02 Orthogroups_2024-Update
Glyma.08G147200 No alias CYS, MET, PRO, and GLY protein 2 0.03 Orthogroups_2024-Update
Glyma.10G081900 No alias plant U-box 23 0.02 Orthogroups_2024-Update
HORVU4Hr1G064070.1 No alias E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
HORVU6Hr1G077120.1 No alias E3 ubiquitin ligase 0.08 Orthogroups_2024-Update
LOC_Os02g34410 No alias U-box domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g46500 No alias U-box, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g03440 No alias avr9/Cf-9 rapidly elicited protein 74, putative, expressed 0.03 Orthogroups_2024-Update
MA_415393g0010 No alias (at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
MA_6335g0010 No alias "(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein... 0.04 Orthogroups_2024-Update
PSME_00049469-RA No alias (at2g35930 : 281.0) Encodes a cytoplasmically localized... 0.05 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.07 Orthogroups_2024-Update
Potri.005G189800 No alias plant U-box 29 0.04 Orthogroups_2024-Update
Potri.007G110600 No alias ARM repeat superfamily protein 0.06 Orthogroups_2024-Update
Potri.009G016100 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Potri.017G135000 No alias ARM repeat superfamily protein 0.06 Orthogroups_2024-Update
Seita.5G392700.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G095100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G474100.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.001G441100.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.003G367000.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G169200.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G169900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G245100.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.010G102000.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Solyc01g005160 No alias Avr9/Cf-9 rapidly elicited protein 1 0.03 Orthogroups_2024-Update
Solyc01g009330 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc01g080920 No alias LOW QUALITY:U-box domain-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc01g107980 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc04g008100 No alias U-box domain-containing protein (AHRD V3.3 *** A0A0A0RAL4_9ROSI) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 21 92
No external refs found!