1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00056555-RA

PSME_00056555-RA


Description : (at5g58430 : 541.0) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.; exocyst subunit exo70 family protein B1 (EXO70B1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein B2 (TAIR:AT1G07000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1082.0) & (original description: no original description)


Gene families : OG_42_0000104 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056555-RA
Cluster HCCA clusters: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
At3g14090 No alias Exocyst subunit exo70 family protein D3... 0.03 Orthogroups_2024-Update
At5g61010 No alias Exocyst complex component EXO70E2... 0.03 Orthogroups_2024-Update
Brara.C00596.1 No alias component *(EXO70) of Exocyst complex 0.02 Orthogroups_2024-Update
Glyma.03G174300 No alias exocyst subunit exo70 family protein H4 0.02 Orthogroups_2024-Update
MA_130238g0010 No alias (at1g72470 : 618.0) A member of EXO70 gene family,... 0.03 Orthogroups_2024-Update
Potri.001G060700 No alias exocyst subunit exo70 family protein C1 0.02 Orthogroups_2024-Update
Sobic.002G215100.2 No alias component *(EXO70) of Exocyst complex 0.03 Orthogroups_2024-Update
Sobic.008G048200.1 No alias component *(EXO70) of Exocyst complex 0.03 Orthogroups_2024-Update
Solyc09g005840 No alias LOW QUALITY:Exocyst subunit EXO70 family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen11g030660 No alias Exo70 exocyst complex subunit 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEA InterProScan predictions
BP GO:0006887 exocytosis IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR004140 Exo70 279 654
No external refs found!