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  5. PSME_00056620-RA

PSME_00056620-RA


Description : (at1g79220 : 139.0) Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G64950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)


Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056620-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
444400 No alias plastid transcriptionally active 15 0.04 Orthogroups_2024-Update
A4A49_33929 No alias transcription termination factor mterf8, chloroplastic 0.02 Orthogroups_2024-Update
At1g62010 No alias F8K4.20 protein [Source:UniProtKB/TrEMBL;Acc:O80705] 0.04 Orthogroups_2024-Update
At1g62490 No alias Mitochondrial transcription termination factor family... 0.03 Orthogroups_2024-Update
At5g64950 No alias Emb [Source:UniProtKB/TrEMBL;Acc:Q9LV83] 0.05 Orthogroups_2024-Update
Bradi1g16160 No alias Mitochondrial transcription termination factor family protein 0.06 Orthogroups_2024-Update
Bradi3g00830 No alias Mitochondrial transcription termination factor family protein 0.03 Orthogroups_2024-Update
Bradi4g23197 No alias Mitochondrial transcription termination factor family protein 0.02 Orthogroups_2024-Update
Brara.A02580.1 No alias mTERF-type transcription factor 0.05 Orthogroups_2024-Update
Brara.C04011.1 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D00047.1 No alias mTERF-type transcription factor 0.07 Orthogroups_2024-Update
Brara.E03356.1 No alias mTERF-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I01477.1 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G119921 No alias Mitochondrial transcription termination factor family protein 0.05 Orthogroups_2024-Update
Glyma.08G306000 No alias Mitochondrial transcription termination factor family protein 0.03 Orthogroups_2024-Update
Glyma.08G306100 No alias Mitochondrial transcription termination factor family protein 0.04 Orthogroups_2024-Update
Glyma.15G153150 No alias Mitochondrial transcription termination factor family protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G024310.1 No alias mTERF-type transcription factor 0.08 Orthogroups_2024-Update
HORVU2Hr1G116050.1 No alias mTERF-type transcription factor 0.02 Orthogroups_2024-Update
HORVU5Hr1G056910.1 No alias mTERF-type transcription factor 0.04 Orthogroups_2024-Update
HORVU6Hr1G003570.23 No alias mTERF-type transcription factor 0.04 Orthogroups_2024-Update
HORVU6Hr1G005710.1 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G072690.1 No alias mTERF-type transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G075340.1 No alias mTERF-type transcription factor 0.08 Orthogroups_2024-Update
HORVU7Hr1G081400.3 No alias mTERF-type transcription factor 0.05 Orthogroups_2024-Update
LOC_Os05g34160 No alias mTERF domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g40710 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g09990 No alias mTERF family protein, expressed 0.03 Orthogroups_2024-Update
MA_178046g0010 No alias (at5g64950 : 104.0) Mitochondrial transcription... 0.04 Orthogroups_2024-Update
MA_17909g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_209070g0010 No alias (at5g64950 : 107.0) Mitochondrial transcription... 0.05 Orthogroups_2024-Update
MA_26585g0010 No alias (at5g64950 : 83.2) Mitochondrial transcription... 0.05 Orthogroups_2024-Update
MA_804585g0010 No alias (at5g64950 : 91.3) Mitochondrial transcription... 0.04 Orthogroups_2024-Update
PSME_00000445-RA No alias (at5g64950 : 86.7) Mitochondrial transcription... 0.03 Orthogroups_2024-Update
PSME_00005633-RA No alias (at5g64950 : 87.4) Mitochondrial transcription... 0.04 Orthogroups_2024-Update
PSME_00020295-RA No alias (at5g64950 : 119.0) Mitochondrial transcription... 0.03 Orthogroups_2024-Update
PSME_00030142-RA No alias (at5g64950 : 89.4) Mitochondrial transcription... 0.05 Orthogroups_2024-Update
PSME_00032600-RA No alias (at5g64950 : 90.5) Mitochondrial transcription... 0.03 Orthogroups_2024-Update
PSME_00049593-RA No alias (at5g64950 : 87.0) Mitochondrial transcription... 0.03 Orthogroups_2024-Update
PSME_00056046-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00056135-RA No alias (at1g79220 : 100.0) Mitochondrial transcription... 0.03 Orthogroups_2024-Update
Potri.001G034500 No alias Mitochondrial transcription termination factor family protein 0.02 Orthogroups_2024-Update
Potri.001G035200 No alias Mitochondrial transcription termination factor family protein 0.02 Orthogroups_2024-Update
Potri.004G013100 No alias Mitochondrial transcription termination factor family protein 0.02 Orthogroups_2024-Update
Potri.012G046700 No alias Mitochondrial transcription termination factor family protein 0.02 Orthogroups_2024-Update
Potri.012G046800 No alias Mitochondrial transcription termination factor family protein 0.02 Orthogroups_2024-Update
Potri.015G038400 No alias Mitochondrial transcription termination factor family protein 0.03 Orthogroups_2024-Update
Pp1s219_66V6 No alias No description available 0.04 Orthogroups_2024-Update
Seita.4G092000.1 No alias mTERF-type transcription factor 0.09 Orthogroups_2024-Update
Seita.4G094400.1 No alias mTERF-type transcription factor 0.09 Orthogroups_2024-Update
Seita.4G095000.1 No alias mTERF-type transcription factor 0.07 Orthogroups_2024-Update
Seita.4G096000.1 No alias mTERF-type transcription factor 0.1 Orthogroups_2024-Update
Seita.6G130600.1 No alias mTERF-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.002G179800.1 No alias mTERF-type transcription factor 0.09 Orthogroups_2024-Update
Sobic.009G131550.1 No alias mTERF-type transcription factor 0.03 Orthogroups_2024-Update
Sopen02g026650 No alias mTERF 0.02 Orthogroups_2024-Update
Sopen04g005870 No alias mTERF 0.02 Orthogroups_2024-Update
Sopen04g028690 No alias mTERF 0.02 Orthogroups_2024-Update
Sopen04g028710 No alias mTERF 0.04 Orthogroups_2024-Update
Sopen04g028720 No alias mTERF 0.04 Orthogroups_2024-Update
Sopen04g028730 No alias mTERF 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003690 MTERF 146 256
IPR003690 MTERF 67 189
IPR003690 MTERF 207 378
No external refs found!