Description : (at5g21960 : 125.0) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.; Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G19210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)
Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00056631-RA | |
Cluster | HCCA clusters: Cluster_99 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At4g32800 | No alias | Ethylene-responsive transcription factor ERF043... | 0.04 | Orthogroups_2024-Update | |
Brara.A00881.1 | No alias | subgroup ERF-IX transcription factor | 0.03 | Orthogroups_2024-Update | |
Brara.C04274.1 | No alias | subgroup ERF-IX transcription factor | 0.02 | Orthogroups_2024-Update | |
Glyma.06G125100 | No alias | cytokinin response factor 4 | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g73770 | No alias | dehydration-responsive element-binding protein,... | 0.02 | Orthogroups_2024-Update | |
LOC_Os03g08500 | No alias | AP2 domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os05g25260 | No alias | AP2 domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os09g26420 | No alias | AP2 domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os10g38000 | No alias | dehydration-responsive element-binding protein,... | 0.02 | Orthogroups_2024-Update | |
PSME_00004941-RA | No alias | (at4g17500 : 94.7) Encodes a member of the ERF (ethylene... | 0.02 | Orthogroups_2024-Update | |
Pp1s60_148V6 | No alias | ap2 erf domain-containing transcription factor | 0.02 | Orthogroups_2024-Update | |
Pp1s6_391V6 | No alias | ap2 erf domain-containing transcription factor | 0.04 | Orthogroups_2024-Update | |
Seita.4G222600.1 | No alias | cutin and suberin biosynthesis transcription factor... | 0.03 | Orthogroups_2024-Update | |
Seita.9G038700.1 | No alias | transcription factor *(CRF) & subgroup ERF-VI... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | InterProScan predictions |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
MF | GO:0019842 | vitamin binding | IEP | Predicted GO |
BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
MF | GO:0030170 | pyridoxal phosphate binding | IEP | Predicted GO |
CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
CC | GO:0044427 | chromosomal part | IEP | Predicted GO |
CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
MF | GO:0070279 | vitamin B6 binding | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001471 | AP2/ERF_dom | 24 | 72 |
No external refs found! |