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  5. PSME_00056652-RA

PSME_00056652-RA


Description : (at2g35930 : 195.0) Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.; plant U-box 23 (PUB23); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 22 (TAIR:AT3G52450.1); Has 2501 Blast hits to 2466 proteins in 187 species: Archae - 0; Bacteria - 34; Metazoa - 243; Fungi - 89; Plants - 1910; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink). & (q64ha9|spl11_orysa : 99.4) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 390.0) & (original description: no original description)


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056652-RA

Target Alias Description ECC score Gene Family Method Actions
172230 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
At1g49780 No alias U-box domain-containing protein 26... 0.04 Orthogroups_2024-Update
Brara.C01808.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Cre03.g178550 No alias Transducin/WD40 repeat-like superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G168980 No alias plant U-box 23 0.02 Orthogroups_2024-Update
Glyma.02G196301 No alias plant U-box 24 0.03 Orthogroups_2024-Update
Glyma.08G147200 No alias CYS, MET, PRO, and GLY protein 2 0.04 Orthogroups_2024-Update
Glyma.12G095000 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Glyma.12G189000 No alias plant U-box 23 0.04 Orthogroups_2024-Update
HORVU6Hr1G089560.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
MA_17715g0010 No alias "(at1g66160 : 253.0) ""CYS, MET, PRO, and GLY protein... 0.04 Orthogroups_2024-Update
MA_410546g0010 No alias (at2g35930 : 239.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
PSME_00043035-RA No alias (at3g52450 : 95.9) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
PSME_00056761-RA No alias (at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.001G216100 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Potri.006G202600 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Potri.009G016200 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Potri.015G031000 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Pp1s109_251V6 No alias u-box domain-containing protein 0.04 Orthogroups_2024-Update
Pp1s67_203V6 No alias MLD14.11; U-box domain-containing protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.4G109000.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.7G104100.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
BP GO:0016567 protein ubiquitination IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 84
No external refs found!