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  5. PSME_00056699-RA

PSME_00056699-RA


Description : (at3g22470 : 322.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 283.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 612.0) & (original description: no original description)


Gene families : OG_42_0011171 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011171_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056699-RA
Cluster HCCA clusters: Cluster_196


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 198 231
IPR002885 Pentatricopeptide_repeat 409 441
IPR002885 Pentatricopeptide_repeat 307 336
IPR002885 Pentatricopeptide_repeat 93 126
IPR002885 Pentatricopeptide_repeat 132 181
IPR002885 Pentatricopeptide_repeat 27 76
IPR002885 Pentatricopeptide_repeat 342 391
IPR002885 Pentatricopeptide_repeat 237 277
IPR002885 Pentatricopeptide_repeat 2 25
No external refs found!