PSME_00056793-RA


Description : (at1g02040 : 87.8) C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G17180.1); Has 5502 Blast hits to 3522 proteins in 286 species: Archae - 2; Bacteria - 120; Metazoa - 2284; Fungi - 460; Plants - 1034; Viruses - 242; Other Eukaryotes - 1360 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)


Gene families : OG_42_0000046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056793-RA
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
A4A49_01661 No alias zinc finger protein zat10 0.03 Orthogroups_2024-Update
A4A49_29565 No alias zinc finger protein zat5 0.03 Orthogroups_2024-Update
A4A49_32244 No alias zinc finger protein zat11 0.03 Orthogroups_2024-Update
A4A49_40512 No alias zinc finger protein zat10 0.03 Orthogroups_2024-Update
A4A49_41461 No alias zinc finger protein zat10 0.03 Orthogroups_2024-Update
At2g26940 No alias C2H2-type zinc finger family protein... 0.03 Orthogroups_2024-Update
Bradi1g14750 No alias salt tolerance zinc finger 0.03 Orthogroups_2024-Update
Bradi4g09410 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Brara.B00139.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.B01283.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C01069.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Brara.E03015.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.F01950.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Brara.J01055.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G035103 No alias salt tolerance zinc finger 0.02 Orthogroups_2024-Update
GRMZM2G069176 No alias salt tolerance zinc finger 0.03 Orthogroups_2024-Update
GRMZM2G361210 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G097500.3 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G112930.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
HORVU5Hr1G113090.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
HORVU5Hr1G113100.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g62130 No alias ZOS1-14 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g66570 No alias ZOS1-19 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g19180 No alias ZOS2-06 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g38600 No alias ZOS5-09 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g39970 No alias ZOS7-08 - C2H2 zinc finger protein, expressed 0.04 Orthogroups_2024-Update
MA_101494g0010 No alias (at1g02040 : 99.8) C2H2-type zinc finger family protein;... 0.03 Orthogroups_2024-Update
MA_109421g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_19127g0010 No alias (at1g02040 : 100.0) C2H2-type zinc finger family... 0.03 Orthogroups_2024-Update
MA_602g0010 No alias (at5g56200 : 91.3) C2H2 type zinc finger transcription... 0.04 Orthogroups_2024-Update
MA_858691g0010 No alias (at1g02040 : 88.2) C2H2-type zinc finger family protein;... 0.04 Orthogroups_2024-Update
MA_9316262g0010 No alias (at2g45120 : 86.3) C2H2-like zinc finger protein;... 0.08 Orthogroups_2024-Update
PSME_00015139-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Potri.001G224600 No alias C2H2 type zinc finger transcription factor family 0.03 Orthogroups_2024-Update
Potri.001G235800 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Orthogroups_2024-Update
Potri.002G119300 No alias salt tolerance zinc finger 0.04 Orthogroups_2024-Update
Potri.002G143600 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
Potri.009G089400 No alias salt tolerance zinc finger 0.04 Orthogroups_2024-Update
Potri.009G166200 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Potri.010G209400 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G229400 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
Potri.014G017300 No alias salt tolerance zinc finger 0.06 Orthogroups_2024-Update
Pp1s162_50V6 No alias cys2 his2 zinc-finger transcription factor 0.03 Orthogroups_2024-Update
Pp1s286_28V6 No alias cys2 his2 zinc-finger transcription factor 0.02 Orthogroups_2024-Update
Seita.2G373600.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Seita.3G062700.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Seita.5G374800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G248000.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Seita.9G357400.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Seita.9G357600.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Seita.9G361000.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Seita.9G449600.1 No alias C2H2-type subclass ZAT transcription factor 0.04 Orthogroups_2024-Update
Sobic.001G035100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G330200.1 No alias C2H2-type subclass ZAT transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G333700.1 No alias C2H2-type subclass ZAT transcription factor 0.05 Orthogroups_2024-Update
Sobic.005G025100.1 No alias C2H2-type subclass ZAT transcription factor 0.02 Orthogroups_2024-Update
Sobic.009G164600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc03g115450 No alias LOW QUALITY:Zinc finger protein 1 (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc05g054650 No alias Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR) 0.03 Orthogroups_2024-Update
Solyc05g054660 No alias Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR) 0.02 Orthogroups_2024-Update
Solyc06g060480 No alias Zinc finger family protein (AHRD V3.3 *** B9HPY6_POPTR) 0.03 Orthogroups_2024-Update
Solyc11g073060 No alias Zinc finger family protein (AHRD V3.3 *** B9HM54_POPTR) 0.02 Orthogroups_2024-Update
Solyc12g088400 No alias Zinc-finger protein (AHRD V3.3 *-* Q40899_PETHY) 0.03 Orthogroups_2024-Update
Sopen05g033130 No alias C2H2-type zinc finger 0.03 Orthogroups_2024-Update
Sopen06g031240 No alias C2H2-type zinc finger 0.03 Orthogroups_2024-Update
Sopen12g030370 No alias C2H2-type zinc finger 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!