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  5. PSME_00056826-RA

PSME_00056826-RA


Description : (at2g13600 : 495.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 147.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 990.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056826-RA
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
123655 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At4g01030 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.02 Orthogroups_2024-Update
At5g52630 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
GRMZM2G045154 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G084530.3 No alias RNA editing factor *(SLO4) 0.03 Orthogroups_2024-Update
LOC_Os04g39410 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_185098g0010 No alias (at3g49170 : 649.0) embryo defective 2261 (EMB2261);... 0.04 Orthogroups_2024-Update
Potri.014G191200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Pp1s183_52V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G153300.2 No alias RNA editing factor *(MEF21) 0.04 Orthogroups_2024-Update
Sobic.007G201400.1 No alias RNA editing factor *(DOT4) 0.03 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen08g024790 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 125 172
IPR002885 Pentatricopeptide_repeat 488 535
IPR002885 Pentatricopeptide_repeat 222 271
IPR002885 Pentatricopeptide_repeat 389 434
IPR002885 Pentatricopeptide_repeat 453 484
IPR002885 Pentatricopeptide_repeat 327 357
IPR002885 Pentatricopeptide_repeat 562 587
IPR002885 Pentatricopeptide_repeat 298 326
IPR002885 Pentatricopeptide_repeat 358 385
No external refs found!