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  5. PSME_00056827-RA

PSME_00056827-RA


Description : (at1g11650 : 300.0) RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29660 Blast hits to 18296 proteins in 811 species: Archae - 14; Bacteria - 2273; Metazoa - 15265; Fungi - 3531; Plants - 5870; Viruses - 0; Other Eukaryotes - 2707 (source: NCBI BLink). & (reliability: 568.0) & (original description: no original description)


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056827-RA
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Brara.H00280.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
GRMZM2G047957 No alias RNA-binding protein 47A 0.02 Orthogroups_2024-Update
PSME_00009027-RA No alias (at4g27000 : 211.0) ATRBP45C; CONTAINS InterPro... 0.04 Orthogroups_2024-Update
Seita.2G234200.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.04 Orthogroups_2024-Update
Solyc03g031720 No alias RNA-binding family protein (AHRD V3.3 *** A0A061FD24_THECC) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 127 197
IPR000504 RRM_dom 230 294
IPR000504 RRM_dom 356 420
IPR000504 RRM_dom 37 99
No external refs found!