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  5. PSME_00056848-RA

PSME_00056848-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056848-RA
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi3g51777 No alias brassinosteroid-responsive RING-H2 0.03 Orthogroups_2024-Update
Brara.C04006.1 No alias E3 ubiquitin ligase *(XERICO) 0.03 Orthogroups_2024-Update
GRMZM2G318408 No alias brassinosteroid-responsive RING-H2 0.02 Orthogroups_2024-Update
Glyma.04G153400 No alias RING/U-box superfamily protein 0.08 Orthogroups_2024-Update
Glyma.11G243400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G235600 No alias brassinosteroid-responsive RING-H2 0.03 Orthogroups_2024-Update
HORVU1Hr1G036510.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g16120 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g45710 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g30310 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.005G081200 No alias RING-H2 finger A2A 0.02 Orthogroups_2024-Update
Potri.010G133700 No alias brassinosteroid-responsive RING-H2 0.02 Orthogroups_2024-Update
Seita.6G056400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g081370 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G63840.1) 0.02 Orthogroups_2024-Update
evm.model.contig_522.14 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003756 protein disulfide isomerase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 129 173
No external refs found!