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  5. PSME_00056947-RA

PSME_00056947-RA


Description : (at2g22070 : 647.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 152.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1230.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056947-RA
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
74627 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
93321 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
99756 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_19306 No alias pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
At3g46790 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Orthogroups_2024-Update
Glyma.09G160300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G232200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G035600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
MA_211508g0010 No alias (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_28051g0010 No alias (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_56322g0010 No alias (at2g22070 : 606.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00003038-RA No alias (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00022404-RA No alias (at3g57430 : 647.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00032333-RA No alias (at4g18750 : 689.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G398900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G174800.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 174 202
IPR002885 Pentatricopeptide_repeat 539 567
IPR002885 Pentatricopeptide_repeat 437 485
IPR002885 Pentatricopeptide_repeat 205 252
IPR002885 Pentatricopeptide_repeat 569 611
IPR002885 Pentatricopeptide_repeat 337 384
IPR002885 Pentatricopeptide_repeat 671 718
IPR032867 DYW_dom 844 968
IPR002885 Pentatricopeptide_repeat 309 334
IPR002885 Pentatricopeptide_repeat 645 670
IPR002885 Pentatricopeptide_repeat 513 535
IPR002885 Pentatricopeptide_repeat 280 306
No external refs found!