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  5. PSME_00056987-RA

PSME_00056987-RA


Description : (at3g23290 : 226.0) LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT2G31160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description)


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00056987-RA
Cluster HCCA clusters: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
At1g78815 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7... 0.04 Orthogroups_2024-Update
At5g58500 No alias LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9] 0.03 Orthogroups_2024-Update
Bradi3g28800 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update
Brara.C02165.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E01235.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G00513.1 No alias plant-specific ALOG-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G027302 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
GRMZM2G147241 No alias Protein of unknown function (DUF640) 0.05 Orthogroups_2024-Update
Glyma.08G078500 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update
Glyma.19G248300 No alias Protein of unknown function (DUF640) 0.04 Orthogroups_2024-Update
HORVU2Hr1G089190.3 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g07030 No alias DUF640 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s73_217V6 No alias No description available 0.02 Orthogroups_2024-Update
Sobic.003G421300.1 No alias plant-specific ALOG-type transcription factor 0.05 Orthogroups_2024-Update
Sobic.006G147500.1 No alias plant-specific ALOG-type transcription factor 0.02 Orthogroups_2024-Update
Sopen09g033090 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 12 134
No external refs found!