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  5. PSME_00057030-RA

PSME_00057030-RA


Description : (at3g27150 : 329.0) Target gene of MIR2111-5p.; Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G40680.1); Has 8386 Blast hits to 4773 proteins in 282 species: Archae - 6; Bacteria - 402; Metazoa - 6487; Fungi - 23; Plants - 1074; Viruses - 50; Other Eukaryotes - 344 (source: NCBI BLink). & (reliability: 658.0) & (original description: no original description)


Gene families : OG_42_0000475 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000475_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00057030-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
79476 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G000070.1 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update
MA_98603g0010 No alias (at3g27150 : 330.0) Target gene of MIR2111-5p.;... 0.03 Orthogroups_2024-Update
Sobic.001G254200.1 No alias substrate adaptor *(ARKP1) of SCF E3 ubiquitin ligase complex 0.03 Orthogroups_2024-Update
Solyc03g113010 No alias F-box/kelch-repeat protein family (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR006652 Kelch_1 355 401
IPR006652 Kelch_1 404 447
No external refs found!