PSME_00057154-RA

Description : (at1g13260 : 282.0) Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.; related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). & (reliability: 564.0) & (original description: no original description)

Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00057154-RA
Cluster	HCCA clusters: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
110104	No alias	related to ABI3/VP1 1	0.02	Orthogroups_2024-Update
Brara.D00076.1	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J02597.1	No alias	RAV/NGATHA-type transcription factor	0.05	Orthogroups_2024-Update
Glyma.01G087500	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.02G099500	No alias	AP2/B3 transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.03G262200	No alias	AP2/B3-like transcriptional factor family protein	0.02	Orthogroups_2024-Update
Glyma.10G204400	No alias	AP2/B3 transcription factor family protein	0.05	Orthogroups_2024-Update
HORVU3Hr1G010140.3	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
HORVU3Hr1G010190.5	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.04	Orthogroups_2024-Update
HORVU3Hr1G010240.1	No alias	RAV/NGATHA-type transcription factor & AP2-RAV-type...	0.04	Orthogroups_2024-Update
HORVU4Hr1G021650.14	No alias	RAV/NGATHA-type transcription factor	0.04	Orthogroups_2024-Update
LOC_Os02g45850	No alias	B3 DNA binding domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g47650	No alias	B3 DNA binding domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os11g05740	No alias	B3 DNA binding domain containing protein, expressed	0.03	Orthogroups_2024-Update
Mp2g22250.1	No alias	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.03	Orthogroups_2024-Update
PSME_00035556-RA	No alias	(at3g25730 : 293.0) ethylene response DNA binding factor...	0.05	Orthogroups_2024-Update
Seita.6G064600.1	No alias	RAV/NGATHA-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.005G041400.2	No alias	RAV/NGATHA-type transcription factor	0.02	Orthogroups_2024-Update
Solyc04g007000	No alias	AP2/B3 transcription factor family protein (AHRD V3.3...	0.03	Orthogroups_2024-Update
Sopen04g002090	No alias	B3 DNA binding domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	336	438
IPR001471	AP2/ERF_dom	176	223

External Links

No external refs found!

PSME_00057154-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation