1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00057163-RA

PSME_00057163-RA


Description : (at1g11290 : 707.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 148.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1414.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00057163-RA
Cluster HCCA clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
105197 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
76175 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
80739 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
At3g11460 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
At4g31070 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.04 Orthogroups_2024-Update
Bradi1g58370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g25480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi4g41840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C03980.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Brara.E02154.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J02108.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G176523 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G007000 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
Glyma.07G068600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G236700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G008800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G058280.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G058070.2 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G057130.1 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_141034g0010 No alias (at4g33170 : 601.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_183738g0010 No alias (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_25515g0010 No alias (at4g13650 : 660.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_63139g0020 No alias (at4g13650 : 686.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_82595g0010 No alias (at3g23330 : 602.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_98224g0010 No alias (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00003038-RA No alias (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
PSME_00056606-RA No alias (at3g03580 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
Potri.001G066100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G005700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G018700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G047600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G137200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.018G092400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.T137000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Seita.5G326600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G119100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.02 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G181000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g016540 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc04g082870 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc09g092150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc11g017290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g029160 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 405 426
IPR002885 Pentatricopeptide_repeat 606 630
IPR002885 Pentatricopeptide_repeat 203 228
IPR032867 DYW_dom 705 829
IPR002885 Pentatricopeptide_repeat 128 175
IPR002885 Pentatricopeptide_repeat 432 477
IPR002885 Pentatricopeptide_repeat 531 579
IPR002885 Pentatricopeptide_repeat 229 275
IPR002885 Pentatricopeptide_repeat 330 377
No external refs found!