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  5. PSME_00057200-RA

PSME_00057200-RA


Description : (at5g33406 : 93.6) hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description)


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00057200-RA
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
Glyma.10G113200 No alias hAT transposon superfamily 0.03 Orthogroups_2024-Update
Glyma.18G154600 No alias hAT dimerisation domain-containing protein 0.02 Orthogroups_2024-Update
LOC_Os06g49050 No alias hAT dimerisation domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00012738-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00013080-RA No alias (at5g33406 : 95.1) hAT dimerisation domain-containing... 0.02 Orthogroups_2024-Update
PSME_00016315-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00022081-RA No alias no hits & (original description: no original description) 0.1 Orthogroups_2024-Update
PSME_00027624-RA No alias (at1g79740 : 142.0) hAT transposon superfamily;... 0.04 Orthogroups_2024-Update
PSME_00050173-RA No alias (at3g17450 : 133.0) hAT dimerisation domain-containing... 0.03 Orthogroups_2024-Update
Sopen11g024690 No alias hypothetical protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0006091 generation of precursor metabolites and energy IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
InterPro domains Description Start Stop
IPR008906 HATC_C_dom 155 222
No external refs found!