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  5. PSME_00057236-RA

PSME_00057236-RA


Description : (at5g11590 : 147.0) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.; TINY2 (TINY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, hypocotyl, leaf; EXPRESSED DURING: LP.10 ten leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q6k7e6|erf1_orysa : 82.4) Ethylene-responsive transcription factor 1 (Ethylene-responsive element-binding factor 1) (EREBP-1) (OsEREBP1) - Oryza sativa (Rice) & (reliability: 294.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00057236-RA
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
A4A49_03202 No alias ethylene-responsive transcription factor erf053 0.03 Orthogroups_2024-Update
A4A49_05036 No alias ethylene-responsive transcription factor 3 0.02 Orthogroups_2024-Update
A4A49_08495 No alias ethylene-responsive transcription factor 3 0.02 Orthogroups_2024-Update
A4A49_13998 No alias ethylene-responsive transcription factor 4 0.03 Orthogroups_2024-Update
A4A49_15668 No alias ethylene-responsive transcription factor rap2-12 0.02 Orthogroups_2024-Update
A4A49_16759 No alias ethylene-responsive transcription factor erf012 0.02 Orthogroups_2024-Update
A4A49_17425 No alias dehydration-responsive element-binding protein 2a 0.03 Orthogroups_2024-Update
A4A49_17723 No alias ethylene-responsive transcription factor 1 0.03 Orthogroups_2024-Update
A4A49_21212 No alias ethylene-responsive transcription factor erf008 0.03 Orthogroups_2024-Update
A4A49_23921 No alias ethylene-responsive transcription factor erf034 0.03 Orthogroups_2024-Update
A4A49_35008 No alias dehydration-responsive element-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_40092 No alias ethylene-responsive transcription factor crf2 0.03 Orthogroups_2024-Update
A4A49_40581 No alias ethylene-responsive transcription factor erf106 0.03 Orthogroups_2024-Update
At1g33760 No alias Ethylene-responsive transcription factor ERF022... 0.05 Orthogroups_2024-Update
At2g23340 No alias Ethylene-responsive transcription factor ERF008... 0.03 Orthogroups_2024-Update
At3g14230 No alias Ethylene-responsive transcription factor RAP2-2... 0.02 Orthogroups_2024-Update
At5g25190 No alias Ethylene-responsive transcription factor ERF003... 0.03 Orthogroups_2024-Update
Bradi1g36590 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g54450 No alias related to AP2 11 0.04 Orthogroups_2024-Update
Bradi1g72457 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Brara.A00041.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.A01788.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.A03156.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Brara.B00253.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.B03207.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.03 Orthogroups_2024-Update
Brara.B03764.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.C00560.1 No alias subgroup ERF-X transcription factor 0.03 Orthogroups_2024-Update
Brara.C03562.1 No alias subgroup ERF-VIII transcription factor 0.05 Orthogroups_2024-Update
Brara.D00707.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.D01307.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
Brara.D01886.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.E00471.1 No alias subgroup ERF-III transcription factor 0.04 Orthogroups_2024-Update
Brara.E02619.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Brara.F02721.1 No alias subgroup ERF-V transcription factor 0.02 Orthogroups_2024-Update
Brara.G01190.1 No alias subgroup ERF-II-DEAR transcription factor 0.03 Orthogroups_2024-Update
Brara.G03123.1 No alias subgroup ERF-VII transcription factor & transcription... 0.04 Orthogroups_2024-Update
Brara.H00929.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Brara.H01292.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Brara.H01777.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
Brara.H02380.1 No alias subgroup ERF-II transcription factor *(ERF16/17/18) 0.02 Orthogroups_2024-Update
Brara.I01326.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.I03370.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.J00058.1 No alias subgroup ERF-III transcription factor 0.04 Orthogroups_2024-Update
Brara.K01713.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G080516 No alias ethylene responsive element binding factor 1 0.02 Orthogroups_2024-Update
GRMZM2G124011 No alias dehydration response element B1A 0.03 Orthogroups_2024-Update
GRMZM2G137341 No alias C-repeat/DRE binding factor 2 0.03 Orthogroups_2024-Update
GRMZM2G138396 No alias redox responsive transcription factor 1 0.04 Orthogroups_2024-Update
GRMZM2G380377 No alias dehydration response element B1A 0.03 Orthogroups_2024-Update
GRMZM2G438202 No alias ethylene responsive element binding factor 4 0.03 Orthogroups_2024-Update
Glyma.02G294100 No alias ethylene response factor 7 0.03 Orthogroups_2024-Update
Glyma.03G017300 No alias related to AP2 11 0.02 Orthogroups_2024-Update
Glyma.05G063500 No alias ethylene responsive element binding factor 5 0.03 Orthogroups_2024-Update
Glyma.06G042100 No alias DREB and EAR motif protein 3 0.03 Orthogroups_2024-Update
Glyma.06G064000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G068800 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G125100 No alias cytokinin response factor 4 0.02 Orthogroups_2024-Update
Glyma.07G156200 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G035000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G137600 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G233800 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G194200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G056200 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G077100 No alias erf domain protein 9 0.02 Orthogroups_2024-Update
HORVU1Hr1G067110.1 No alias subgroup ERF-VIII transcription factor 0.05 Orthogroups_2024-Update
HORVU2Hr1G098330.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G071890.2 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
HORVU4Hr1G077310.1 No alias subgroup ERF-VII transcription factor 0.02 Orthogroups_2024-Update
HORVU4Hr1G077360.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G062380.3 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
LOC_Os06g40150 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g43210 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10209922g0010 No alias (at1g19210 : 116.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_10432141g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_214532g0010 No alias (at5g21960 : 81.6) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_2446g0010 No alias (at2g20880 : 136.0) Integrase-type DNA-binding... 0.03 Orthogroups_2024-Update
MA_3405g0010 No alias (q40476|erf1_tobac : 120.0) Ethylene-responsive... 0.04 Orthogroups_2024-Update
MA_65190g0010 No alias (at5g19790 : 91.3) encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_81029g0010 No alias (q9sxs8|erf3_tobac : 95.1) Ethylene-responsive... 0.03 Orthogroups_2024-Update
MA_83118g0010 No alias (at1g78080 : 90.5) Encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_896002g0010 No alias (at5g11590 : 147.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
PSME_00004892-RA No alias (at1g19210 : 123.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
PSME_00016017-RA No alias (at5g25190 : 150.0) encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00037532-RA No alias (at5g61890 : 129.0) encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00037661-RA No alias (at4g17500 : 149.0) Encodes a member of the ERF... 0.04 Orthogroups_2024-Update
Potri.001G069300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G077700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G046500 No alias DREB and EAR motif protein 2 0.02 Orthogroups_2024-Update
Potri.010G006800 No alias ethylene-responsive element binding protein 0.02 Orthogroups_2024-Update
Potri.014G025200 No alias related to AP2 1 0.03 Orthogroups_2024-Update
Potri.015G023200 No alias cytokinin response factor 4 0.03 Orthogroups_2024-Update
Potri.017G055400 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Pp1s127_75V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s132_34V6 No alias transcriptional factor 0.02 Orthogroups_2024-Update
Pp1s487_24V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.1G248300.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
Seita.1G259000.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Seita.1G330800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G364700.1 No alias transcription factor *(ERN1) & subgroup ERF-V... 0.03 Orthogroups_2024-Update
Seita.3G289200.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.03 Orthogroups_2024-Update
Seita.3G291500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G323300.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Seita.9G500100.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Seita.9G516700.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
Sobic.004G295500.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G295700.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G184700.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Solyc07g053740 No alias Ethylene Response Factor F.4 0.02 Orthogroups_2024-Update
Sopen04g024720 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen04g027740 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen07g024840 No alias AP2 domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 118 168
No external refs found!