Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brachypodium release: Bradi1g00381 | |
Cluster | HCCA clusters: Cluster_192 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At4g33990 | No alias | Pentatricopeptide repeat-containing protein At4g33990... | 0.02 | Orthogroups_2024-Update | |
Bradi3g29450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Bradi3g50980 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.F03349.1 | No alias | RNA editing factor *(REME1) & RNA editing factor *(OTP87) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G168170 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Glyma.16G172800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G023470.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
HORVU2Hr1G107430.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G115530.39 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU4Hr1G021240.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G063960.3 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU5Hr1G040610.4 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G066010.3 | No alias | RNA editing factor *(OTP87) | 0.04 | Orthogroups_2024-Update | |
LOC_Os01g08120 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g15530 | No alias | tetratricopeptide-like helical, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os08g28830 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os10g39460 | No alias | selenium-binding protein-like, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os11g45410 | No alias | expressed protein | 0.03 | Orthogroups_2024-Update | |
MA_124907g0010 | No alias | (at2g13600 : 490.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_2473g0010 | No alias | (at3g12770 : 597.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
MA_82595g0010 | No alias | (at3g23330 : 602.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
PSME_00017551-RA | No alias | (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... | 0.06 | Orthogroups_2024-Update | |
Potri.001G466066 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.002G155100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.003G088600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Pp1s15_448V6 | No alias | MZB10.7; pentatricopeptide (PPR) repeat-containing... | 0.03 | Orthogroups_2024-Update | |
Pp1s73_226V6 | No alias | No description available | 0.06 | Orthogroups_2024-Update | |
Seita.2G031700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G203900.1 | No alias | RNA editing factor *(OTP87) | 0.02 | Orthogroups_2024-Update | |
Seita.3G006500.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.3G244200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G009400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G033600.2 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Solyc08g023640 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.02 | Orthogroups_2024-Update | |
Sopen05g018650 | No alias | PPR repeat family | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006813 | potassium ion transport | IEP | Predicted GO |
MF | GO:0008324 | cation transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015077 | monovalent inorganic cation transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015079 | potassium ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015672 | monovalent inorganic cation transport | IEP | Predicted GO |
MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0030001 | metal ion transport | IEP | Predicted GO |
BP | GO:0034220 | ion transmembrane transport | IEP | Predicted GO |
MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0071805 | potassium ion transmembrane transport | IEP | Predicted GO |
BP | GO:0098655 | cation transmembrane transport | IEP | Predicted GO |
BP | GO:0098660 | inorganic ion transmembrane transport | IEP | Predicted GO |
BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 363 | 406 |
IPR032867 | DYW_dom | 609 | 732 |
IPR002885 | Pentatricopeptide_repeat | 262 | 292 |
IPR002885 | Pentatricopeptide_repeat | 234 | 259 |
IPR002885 | Pentatricopeptide_repeat | 436 | 462 |
IPR002885 | Pentatricopeptide_repeat | 576 | 604 |
IPR002885 | Pentatricopeptide_repeat | 142 | 166 |
IPR002885 | Pentatricopeptide_repeat | 73 | 104 |
IPR002885 | Pentatricopeptide_repeat | 464 | 488 |
IPR002885 | Pentatricopeptide_repeat | 509 | 533 |
No external refs found! |