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  5. Sopen06g019610

Sopen06g019610


Description : Zinc-ribbon


Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g019610
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
78412 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.04 Orthogroups_2024-Update
Bradi1g75350 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.02 Orthogroups_2024-Update
Bradi3g27900 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
Bradi4g05690 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.04 Orthogroups_2024-Update
GRMZM2G144782 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.15G097300 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G025720.9 No alias E3 ubiquitin ligase *(CHY) 0.03 Orthogroups_2024-Update
LOC_Os10g31850 No alias RING finger and CHY zinc finger domain-containing... 0.03 Orthogroups_2024-Update
Seita.3G344800.1 No alias E3 ubiquitin ligase *(CHY) 0.02 Orthogroups_2024-Update
Seita.5G298400.1 No alias E3 ubiquitin ligase *(CHY) 0.03 Orthogroups_2024-Update
Sobic.003G278500.1 No alias E3 ubiquitin ligase *(CHY) 0.05 Orthogroups_2024-Update
Sobic.008G117200.1 No alias E3 ubiquitin ligase *(CHY) 0.02 Orthogroups_2024-Update
Solyc01g067360 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc06g054540 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein (AHRD... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR008913 Znf_CHY 18 98
IPR018957 Znf_C3HC4_RING-type 153 195
IPR039512 RCHY1_zinc-ribbon 200 258
No external refs found!