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  5. Sopen06g019630

Sopen06g019630


Description : SNF2 family N-terminal domain


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g019630
Cluster HCCA clusters: Cluster_327

Target Alias Description ECC score Gene Family Method Actions
440203 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
A4A49_40832 No alias atp-dependent dna helicase ddm1 0.04 Orthogroups_2024-Update
At5g18620 No alias Chromatin-remodeling complex ATPase... 0.04 Orthogroups_2024-Update
Cre12.g508150 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Glyma.06G063400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Glyma.11G067500 No alias chromatin remodeling 1 0.05 Orthogroups_2024-Update
Kfl00125_0020 kfl00125_0020_v1.... (at2g13370 : 403.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
MA_104034g0010 No alias (at5g66750 : 811.0) Protein is similar to SWI2/SNF2... 0.04 Orthogroups_2024-Update
Pp1s338_32V6 No alias chromodomain helicase dna binding protein 3 0.04 Orthogroups_2024-Update
Seita.2G023300.1 No alias chromatin remodeling factor *(DDM1) 0.02 Orthogroups_2024-Update
Solyc02g062780 No alias chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1) 0.03 Orthogroups_2024-Update
Sopen02g013810 No alias SNF2 family N-terminal domain 0.04 Orthogroups_2024-Update
evm.model.tig00000128.11 No alias (at5g18620 : 692.0) chromatin remodeling factor17... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006338 chromatin remodeling IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
MF GO:0031491 nucleosome binding IEA InterProScan predictions
BP GO:0043044 ATP-dependent chromatin remodeling IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR015195 SLIDE 893 1003
IPR001650 Helicase_C 489 601
IPR015194 ISWI_HAND-dom 750 835
IPR000330 SNF2_N 199 466
No external refs found!