Sopen06g019860

Description : SRF-type transcription factor (DNA-binding and dimerisation domain)

Gene families : OG_42_0003220 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003220_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g019860
Cluster	HCCA clusters: Cluster_134

Target	Alias	Description	ECC score	Gene Family Method	Actions
Solyc01g097850	No alias	LOW QUALITY:Transcription factor, MADS-box (AHRD V3.3...	0.03	Orthogroups_2024-Update
Solyc03g007020	No alias	LOW QUALITY:MADS-box transcription factor family protein...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	4	41

External Links

No external refs found!