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  5. Bradi1g08840

Bradi1g08840


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0004009 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004009_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g08840
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G235800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G007400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g38950 No alias PPR repeat containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g53490 No alias PPR repeat containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.010G055500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G083800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G092300.1 No alias splicing factor *(MISF) 0.04 Orthogroups_2024-Update
Solyc09g082390 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Sopen05g009570 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 402 451
IPR002885 Pentatricopeptide_repeat 297 345
IPR002885 Pentatricopeptide_repeat 233 257
IPR002885 Pentatricopeptide_repeat 476 505
IPR002885 Pentatricopeptide_repeat 163 191
IPR002885 Pentatricopeptide_repeat 261 291
IPR002885 Pentatricopeptide_repeat 363 395
No external refs found!