Sopen06g020170

Description : PPR repeat family

Gene families : OG_42_0011651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011651_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g020170
Cluster	HCCA clusters: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method	Actions
Potri.017G087600	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	156	183
IPR002885	Pentatricopeptide_repeat	86	113
IPR002885	Pentatricopeptide_repeat	390	414
IPR002885	Pentatricopeptide_repeat	214	262
IPR002885	Pentatricopeptide_repeat	317	363
IPR032867	DYW_dom	490	622

External Links

No external refs found!