Bradi1g10697

Description : Vacuolar sorting protein 39

Gene families : OG_42_0005241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005241_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi1g10697
Cluster	HCCA clusters: Cluster_184

Target	Alias	Description	ECC score	Gene Family Method
149115	No alias	Vacuolar sorting protein 39	0.02	Orthogroups_2024-Update
Glyma.01G176000	No alias	Vacuolar sorting protein 39	0.06	Orthogroups_2024-Update
Glyma.11G068300	No alias	Vacuolar sorting protein 39	0.05	Orthogroups_2024-Update
HORVU4Hr1G008150.1	No alias	HOPS-specific component *(VPS39) of HOPS/CORVET membrane...	0.03	Orthogroups_2024-Update
Kfl00516_0100	kfl00516_0100_v1.1	(at4g36630 : 445.0) EMBRYO DEFECTIVE 2754 (EMB2754);...	0.02	Orthogroups_2024-Update
Mp3g21320.1	No alias	HOPS-specific component VPS39 of HOPS/CORVET membrane...	0.02	Orthogroups_2024-Update
Pp1s51_78V6	No alias	vacuolar protein sorting 39	0.02	Orthogroups_2024-Update
Seita.9G116000.1	No alias	HOPS-specific component *(VPS39) of HOPS/CORVET membrane...	0.04	Orthogroups_2024-Update
Sobic.001G114000.1	No alias	HOPS-specific component *(VPS39) of HOPS/CORVET membrane...	0.03	Orthogroups_2024-Update
evm.model.tig00001408.13	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	InterProScan predictions
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	InterProScan predictions
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Predicted GO
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Predicted GO
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Predicted GO
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Predicted GO
CC	GO:0005669	transcription factor TFIID complex	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Predicted GO
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Predicted GO
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Predicted GO
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predicted GO
BP	GO:0009966	regulation of signal transduction	IEP	Predicted GO
BP	GO:0010646	regulation of cell communication	IEP	Predicted GO
BP	GO:0016197	endosomal transport	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
BP	GO:0016482	cytosolic transport	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Predicted GO
BP	GO:0022406	membrane docking	IEP	Predicted GO
BP	GO:0023051	regulation of signaling	IEP	Predicted GO
CC	GO:0030906	retromer, cargo-selective complex	IEP	Predicted GO
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
CC	GO:0032991	protein-containing complex	IEP	Predicted GO
MF	GO:0035091	phosphatidylinositol binding	IEP	Predicted GO
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Predicted GO
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Predicted GO
CC	GO:0044448	cell cortex part	IEP	Predicted GO
CC	GO:0044459	plasma membrane part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
BP	GO:0048278	vesicle docking	IEP	Predicted GO
BP	GO:0048583	regulation of response to stimulus	IEP	Predicted GO
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Predicted GO
BP	GO:0051640	organelle localization	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO
CC	GO:0098797	plasma membrane protein complex	IEP	Predicted GO
CC	GO:0099023	tethering complex	IEP	Predicted GO
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Predicted GO
BP	GO:0140029	exocytic process	IEP	Predicted GO
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predicted GO
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predicted GO
MF	GO:1990380	Lys48-specific deubiquitinase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000547	Clathrin_H-chain/VPS_repeat	624	758
IPR001180	CNH_dom	74	274
IPR019452	VPS39/TGF_beta_rcpt-assoc_1	495	605
IPR019453	VPS39/TGF_beta_rcpt-assoc_2	859	967

External Links

No external refs found!

Bradi1g10697

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation