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  5. Bradi1g14190

Bradi1g14190


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g14190
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Bradi2g38453 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
GRMZM2G018974 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G416201 No alias rna processing factor 2 0.05 Orthogroups_2024-Update
GRMZM2G431850 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
HORVU1Hr1G011150.3 No alias Unknown function 0.09 Orthogroups_2024-Update
HORVU1Hr1G013810.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G014030.2 No alias Unknown function 0.07 Orthogroups_2024-Update
LOC_Os10g35440 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
Seita.5G061100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G058000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G058100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G161400.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.8G167800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G169000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G204600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G204800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G054200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G024600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.005G026500.2 No alias Unknown function 0.08 Orthogroups_2024-Update
Sobic.005G027600.2 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 619 668
IPR002885 Pentatricopeptide_repeat 409 457
IPR002885 Pentatricopeptide_repeat 549 596
IPR002885 Pentatricopeptide_repeat 303 352
IPR002885 Pentatricopeptide_repeat 478 528
IPR002885 Pentatricopeptide_repeat 231 262
IPR002885 Pentatricopeptide_repeat 264 296
IPR002885 Pentatricopeptide_repeat 678 733
IPR002885 Pentatricopeptide_repeat 376 406
IPR002885 Pentatricopeptide_repeat 167 195
No external refs found!