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  5. Bradi1g20230

Bradi1g20230


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g20230
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
133644 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Brara.A02436.1 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
Brara.I01685.1 No alias RNA editing factor *(PGN) 0.02 Orthogroups_2024-Update
Glyma.05G026400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G078900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G069901 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G221300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G288100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G163300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G001760.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G080810.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
LOC_Os01g45840 No alias CRR2, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g34700 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os02g46980 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g14130 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g41120 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g33700 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g14980 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_10248752g0010 No alias (at3g23330 : 422.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_10293513g0010 No alias (at4g13650 : 527.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_2473g0010 No alias (at3g12770 : 597.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00002375-RA No alias (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00011140-RA No alias (at1g11290 : 575.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00017531-RA No alias (at1g11290 : 661.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00017819-RA No alias (at3g03580 : 689.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00037812-RA No alias (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00042206-RA No alias (at1g11290 : 595.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00046650-RA No alias (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00050906-RA No alias (at4g33170 : 629.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00055422-RA No alias (at2g13600 : 420.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00056121-RA No alias (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056368-RA No alias (at1g11290 : 697.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.002G175900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G205900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.1G263300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G373100.1 No alias RNA editing factor *(OTP90) 0.04 Orthogroups_2024-Update
Seita.3G244400.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Seita.4G046900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G168900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G216600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G302500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G403900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G514800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G034400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G109000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G356100.1 No alias RNA editing factor *(CRR2) 0.03 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G266300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G006800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
Sobic.008G066900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G088200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc03g096610 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen05g007940 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 543 590
IPR002885 Pentatricopeptide_repeat 340 385
IPR002885 Pentatricopeptide_repeat 517 538
IPR002885 Pentatricopeptide_repeat 215 240
IPR002885 Pentatricopeptide_repeat 137 165
IPR002885 Pentatricopeptide_repeat 243 272
IPR002885 Pentatricopeptide_repeat 617 641
IPR002885 Pentatricopeptide_repeat 417 442
IPR002885 Pentatricopeptide_repeat 315 334
IPR002885 Pentatricopeptide_repeat 444 473
No external refs found!