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Bradi1g20360


Description : SC35-like splicing factor 33


Gene families : OG_42_0000852 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000852_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi1g20360
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Brara.D00395.1 No alias RNA splicing factor *(SCL28/30/33) 0.02 Orthogroups_2024-Update
Cre13.g586916 No alias SC35-like splicing factor 28 0.03 Orthogroups_2024-Update
Glyma.14G188200 No alias SC35-like splicing factor 30A 0.06 Orthogroups_2024-Update
HORVU6Hr1G034010.3 No alias RNA splicing factor *(SCL28/30/33) 0.04 Orthogroups_2024-Update
PSME_00000975-RA No alias (at1g55310 : 158.0) Encodes a SR spliceosome protein... 0.02 Orthogroups_2024-Update
Potri.001G006400 No alias SC35-like splicing factor 30A 0.03 Orthogroups_2024-Update
evm.model.tig00000402.16 No alias (at1g55310 : 108.0) Encodes a SR spliceosome protein... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016681 oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 40 109
No external refs found!