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  5. Sopen06g021530

Sopen06g021530


Description : Retroviral aspartyl protease


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g021530
Cluster HCCA clusters: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G122960.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G038840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g17292 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Mp2g03770.1 No alias no hits & (original description: none) 0.03 Orthogroups_2024-Update
Sopen04g035310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 761 920
IPR005162 Retrotrans_gag_dom 209 305
IPR001584 Integrase_cat-core 1304 1415
No external refs found!