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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brachypodium release: Bradi1g21907 | |
| Cluster | HCCA clusters: Cluster_25 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 136134 | No alias | mitochondrial editing factor 22 | 0.04 | Orthogroups_2024-Update | |
| 171135 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.08 | Orthogroups_2024-Update | |
| A4A49_36693 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
| Bradi4g42160 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.01G159100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.08G117400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.08G141600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G102300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU1Hr1G019670.6 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G056450.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os04g43430 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os12g01850 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| Mp8g01790.1 | No alias | ssDNA-binding protein (OSB) | 0.03 | Orthogroups_2024-Update | |
| PSME_00001035-RA | No alias | (at1g16480 : 699.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
| PSME_00011507-RA | No alias | (at2g27610 : 676.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00024152-RA | No alias | (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00036148-RA | No alias | (at2g22070 : 583.0) pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| Seita.1G191400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.1G237400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.2G247200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G242100.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
| Seita.5G385400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.7G164600.1 | No alias | RNA editing factor *(MEF12) | 0.02 | Orthogroups_2024-Update | |
| Seita.7G165500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.7G277600.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Seita.8G075300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.8G163400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.001G009400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G347100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G436600.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G084400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.002G172500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G109000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G282000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G312000.1 | No alias | RNA editing factor *(CLB19) | 0.03 | Orthogroups_2024-Update | |
| Sobic.005G110550.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G137800.3 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.008G041000.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.010G066900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc03g116000 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Sopen01g006160 | No alias | PPR repeat | 0.01 | Orthogroups_2024-Update | |
| Sopen03g026730 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_2025.47 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003677 | DNA binding | IEP | Predicted GO |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
| BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| No external refs found! |