Description : Ribosomal L38e protein family
Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brachypodium release: Bradi1g25302 | |
Cluster | HCCA clusters: Cluster_57 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
270247 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
A4A49_59471 | No alias | 60s ribosomal protein l38 | 0.03 | Orthogroups_2024-Update | |
Brara.C02203.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Brara.E00357.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Brara.I04090.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Cre07.g325746 | No alias | Ribosomal L38e protein family | 0.12 | Orthogroups_2024-Update | |
Glyma.08G100000 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
HORVU2Hr1G043220.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Kfl00433_0040 | kfl00433_0040_v1.1 | (at3g59540 : 122.0) Ribosomal L38e protein family;... | 0.05 | Orthogroups_2024-Update | |
LOC_Os11g24610 | No alias | 60S ribosomal protein L38, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_20588g0010 | No alias | (at3g59540 : 129.0) Ribosomal L38e protein family;... | 0.05 | Orthogroups_2024-Update | |
Mp7g14520.1 | No alias | component RPL38 of LSU proteome component | 0.05 | Orthogroups_2024-Update | |
PSME_00035421-RA | No alias | (at3g59540 : 127.0) Ribosomal L38e protein family;... | 0.07 | Orthogroups_2024-Update | |
Potri.007G131800 | No alias | Ribosomal L38e protein family | 0.07 | Orthogroups_2024-Update | |
Potri.010G181200 | No alias | Ribosomal L38e protein family | 0.05 | Orthogroups_2024-Update | |
Potri.017G020000 | No alias | Ribosomal L38e protein family | 0.03 | Orthogroups_2024-Update | |
Pp1s227_122V6 | No alias | 60s ribosomal protein l38 | 0.1 | Orthogroups_2024-Update | |
Pp1s288_10V6 | No alias | 60s ribosomal protein l38 | 0.09 | Orthogroups_2024-Update | |
Pp1s46_212V6 | No alias | 60s ribosomal protein l38 | 0.02 | Orthogroups_2024-Update | |
Pp1s67_172V6 | No alias | 60s ribosomal protein l38 | 0.04 | Orthogroups_2024-Update | |
Seita.2G333600.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Seita.2G344700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Seita.6G231700.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Sobic.002G331300.1 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Sobic.007G184600.2 | No alias | component *(eL38) of large ribosomal-subunit (LSU) proteome | 0.14 | Orthogroups_2024-Update | |
Solyc05g055640 | No alias | ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1) | 0.03 | Orthogroups_2024-Update | |
Solyc11g008510 | No alias | 60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC) | 0.05 | Orthogroups_2024-Update | |
Sopen05g034080 | No alias | Ribosomal L38e protein family | 0.02 | Orthogroups_2024-Update | |
Sopen11g004300 | No alias | Ribosomal L38e protein family | 0.09 | Orthogroups_2024-Update | |
evm.model.tig00021719.6 | No alias | (at3g59540 : 110.0) Ribosomal L38e protein family;... | 0.09 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0004096 | catalase activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0020037 | heme binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
MF | GO:0030674 | protein binding, bridging | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
MF | GO:0051015 | actin filament binding | IEP | Predicted GO |
MF | GO:0060090 | molecular adaptor activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002675 | Ribosomal_L38e | 2 | 69 |
No external refs found! |